Automatic extraction of protein interactions from scientific abstracts.
نویسندگان
چکیده
This paper motivates the use of Information Extraction (IE) for gathering data on protein interactions, describes the customization of an existing IE system, SRI's Highlight, for this task and presents the results of an experiment on unseen Medline abstracts which show that customization to a new domain can be fast, reliable and cost-effective.
منابع مشابه
Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions
We describe the basic design of a system for automatic detection of protein-protein interactions extracted from scientific abstracts. By restricting the problem domain and imposing a number of strong assumptions which include pre-specified protein names and a limited set of verbs that represent actions, we show that it is possible to perform accurate information extraction. The performance of t...
متن کاملAutomatic Extraction of Protein Interactions from Scienti c Abstracts
This paper motivates the use of Information Extraction IE for gathering data on protein interactions, describes the customisation of an existing IE system, SRI's Highlight, for this task and presents the results of an experimenton unseen Medline abstracts which show that customisation to a new domain can be fast, reliable and cost-eeective.
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A major goal in biomedical text processing is the automatic extraction of protein interaction information from scientific articles or abstracts. We approach this task with a topic-based generative model. Under the model, sentences in biomedical abstracts can be generated by either an ’interaction’ topic if they contain or discuss interacting proteins or a ’background’ topic otherwise. This stru...
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This paper motivates the use of Information Extraction (IE) for gathering data on protein interactions, describes the customisation of an existing IE system, SRI's Highlight, for this task and presents the results of an experimenton unseen Medline abstracts which show that customisation to a new domain can be fast, reliable and cost-eeective.
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ورودعنوان ژورنال:
- Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
دوره شماره
صفحات -
تاریخ انتشار 2000